PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29643.m000323
Common NameLOC8279905, RCOM_0550010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 543aa    MW: 59791.9 Da    PI: 9.1113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29643.m000323genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000166686323
                   ETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                   C++C+k F r  nL+ H r H
  29643.m000323 66 CEICNKGFQRDQNLQLHRRGH 86
                   *******************88 PP

2zf-C2H211.70.00078140162123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k +  +s+ k H + +
  29643.m000323 140 WKCEKCSKKYAVQSDWKAHSKIC 162
                    58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.96E-76386No hitNo description
Gene3DG3DSA:3.30.160.602.5E-56386IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.116486IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8246486IPR007087Zinc finger, C2H2
PROSITE patternPS0002806686IPR007087Zinc finger, C2H2
SMARTSM00355110105135IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4128161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.96E-7135160No hitNo description
SMARTSM00355140140160IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MMPEDGFSIP STIIGFVQEP TTNPNPNPTS NPVMKKKRNL PGTPDPDAEV VALSPKSLMA  60
TNRFLCEICN KGFQRDQNLQ LHRRGHNLPW KLKQRSTKEV KKKVYICPEK SCVHHDPSRA  120
LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHSK ICGTREYRCD CGTLFSRKDS  180
FITHRAFCDA LAEESGRFTP VSAAINANLR NDLINGANSI NLPPPHHQTT VISQFSSVFR  240
PEFGTTTASE LLGSNNLGVD VQKPRLPIWL DNANPQLNPI GVGSNANSFL PHELVQTQQI  300
NMFGSGSSQL QWLSKYQEGL FTGSLPRGLK EEEGSKGDLT ESITSLYSSN HHHQQQRSSL  360
SSSSSAHMSA TALLQKAAQM GSTRSNNSIS LMSSSLSNVS NFNSYNQRKN NDETLKFLSS  420
RQPINQAENL NELANSISPS GTTPAATFTK ESTLLGDSNS SSVLTSTRNN TTKHWNHLIM  480
QQQANGDQQN HGFISSDEVV EGSLTRDFLG VGAAEAASRA PFLQHELVKF ASIGSGSHEF  540
EPI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532599.10.0PREDICTED: protein indeterminate-domain 9
RefseqXP_015582988.10.0PREDICTED: protein indeterminate-domain 9
RefseqXP_015582989.10.0PREDICTED: protein indeterminate-domain 9
SwissprotQ944L31e-118IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLB9T2Y00.0B9T2Y0_RICCO; Nucleic acid binding protein, putative
STRINGVIT_06s0004g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.11e-103C2H2-like zinc finger protein